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What are four methods that scientists use to study homologies

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The four methods that scientists use to study homologies include using HSPs in Viterbi algorithm, bi-directional Viterbi algorithm, biased hidden Markov models and using HSPs to position target regions. They also use Data sets which include Training data set of human genes and Validation and testing data sets of homologous genes. You can check out http://evolution.berkeley.edu/evolibrary/article/similarity_hs_10 for more information.

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