www.nextflow.io

Features · Quick start; Examples. Basic pipeline · Mixing scripting languages · BLAST pipeline · RNA-Seq pipeline · Variant Calling pipeline. Developers.

www.nextflow.io/blog.html

Paolo Di Tommaso; 22 May 2019. The ability to create components, libraries or module files has been among the most requested feature ever over the years.

www.nextflow.io/presentations.html

Jordi Rambla from the European Genome-Phenome Archive (EGA) presents " Standardizing life sciences datasets to improve studies reproducibility in the ...

www.nextflow.io/example3.html

BLAST pipeline. The example below splits a FASTA file into chunks and executes for each of them a BLAST query in a parallel manner. Then, all the sequences ...

www.nextflow.io/example2.html

Mixing scripting languages. When using Nextflow your are not limited to BASH scripts, in a pipeline script you can mix any scripting language. In means that for ...

www.nextflow.io/example4.html

RNA-Seq pipeline. The example below shows how put together a RNAseq pipeline with basic functionality. It maps a collection of read-pairs to a given reference ...

www.nextflow.io/example1.html

Basic pipeline. This example shows how write a pipeline made up of two simple BASH processes, so that the results produced by the first are consumed by the ...

www.nextflow.io/tags/bioinformatics.html

Tag: bioinformatics. June 2016. 10 - Docker for dunces & Nextflow for nunces. April 2016. 13 - Workflows & publishing: best practice for reproducibility. February  ...

www.nextflow.io/about-us.html

Nextflow is developed by the Comparative Bioinformatics group at the Barcelona Centre for Genomic Regulation (CRG). It is free open source software ...